|Appears in Collections:||Biological and Environmental Sciences Journal Articles|
|Peer Review Status:||Refereed|
|Title:||Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative|
|Author(s):||Brown, Mark V|
van de Kamp, Jodie
Seymour, Justin R
Messer, Lauren F.
Nelson, Tiffanie M.
Davies, Claire H.
|Keywords:||Library and Information Sciences|
Probability and Uncertainty
Computer Science Applications
Statistics and Probability
|Citation:||Brown MV, van de Kamp J, Ostrowski M, Seymour JR, Ingleton T, Messer LF, Jeffries T, Siboni N, Laverock B, Bibiloni-Isaksson J, Nelson TM, Coman F, Davies CH, Frampton D, Rayner M, Goossen K & Robert S (2018) Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. <i>Scientific Data</i>, 5 (1), Art. No.: 180130. https://doi.org/10.1038/sdata.2018.130|
|Abstract:||Sustained observations of microbial dynamics are rare, especially in southern hemisphere waters. The Australian Marine Microbial Biodiversity Initiative (AMMBI) provides methodologically standardized, continental scale, temporal phylogenetic amplicon sequencing data describing Bacteria, Archaea and microbial Eukarya assemblages. Sequence data is linked to extensive physical, biological and chemical oceanographic contextual information. Samples are collected monthly to seasonally from multiple depths at seven sites: Darwin Harbour (Northern Territory), Yongala (Queensland), North Stradbroke Island (Queensland), Port Hacking (New South Wales), Maria Island (Tasmania), Kangaroo Island (South Australia), Rottnest Island (Western Australia). These sites span ~30° of latitude and ~38° longitude, range from tropical to cold temperate zones, and are influenced by both local and globally significant oceanographic and climatic features. All sequence datasets are provided in both raw and processed fashion. Currently 952 samples are publically available for bacteria and archaea which include 88,951,761 bacterial (72,435 unique) and 70,463,079 archaeal (24,205 unique) 16 S rRNA v1-3 gene sequences, and 388 samples are available for eukaryotes which include 39,801,050 (78,463 unique) 18 S rRNA v4 gene sequences.|
|Rights:||This article is licensed under a Creative Commons Attribution 4.0 Interna tional License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons. org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/ zero/1.0/ applies to the metadata files made available in this article.|
|Notes:||Additional Authors: Bronwyn Holmes, Guy C.J. Abell, Pascal Craw, Tim Kahlke, Swan Li San Sow, Kirsty McAllister, Jonathan Windsor, Michele Skuza, Ryan Crossing, Nicole Patten, Paul Malthouse, Paul D. van Ruth, Ian Paulsen, Jed A. Fuhrman, Anthony Richardson, Jason Koval, Andrew Bissett, Anna Fitzgerald, Tim Moltmann & Levente Bodrossy|
|sdata2018130 (1).pdf||Fulltext - Published Version||1.02 MB||Adobe PDF||View/Open|
This item is protected by original copyright
A file in this item is licensed under a Creative Commons License
Items in the Repository are protected by copyright, with all rights reserved, unless otherwise indicated.
The metadata of the records in the Repository are available under the CC0 public domain dedication: No Rights Reserved https://creativecommons.org/publicdomain/zero/1.0/
If you believe that any material held in STORRE infringes copyright, please contact firstname.lastname@example.org providing details and we will remove the Work from public display in STORRE and investigate your claim.