Please use this identifier to cite or link to this item: http://hdl.handle.net/1893/28485
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dc.contributor.authorMatallana-Surget, Sabineen_UK
dc.contributor.authorWerner, Johannesen_UK
dc.contributor.authorWattiez, Ruddyen_UK
dc.contributor.authorLebaron, Karineen_UK
dc.contributor.authorIntertaglia, Laurenten_UK
dc.contributor.authorRegan, Callumen_UK
dc.contributor.authorMorris, Jamesen_UK
dc.contributor.authorTeeling, Hannoen_UK
dc.contributor.authorFerrer, Manuelen_UK
dc.contributor.authorGolyshin, Peter Nen_UK
dc.contributor.authorGerogiorgis, Dimitriosen_UK
dc.contributor.authorReilly, Simon Ien_UK
dc.contributor.authorLebaron, Philippeen_UK
dc.date.accessioned2019-01-11T12:18:43Z-
dc.date.available2019-01-11T12:18:43Z-
dc.date.issued2018-12-21en_UK
dc.identifier.other3125en_UK
dc.identifier.urihttp://hdl.handle.net/1893/28485-
dc.description.abstractEpibacterium mobile BBCC367 is a marine bacterium that is common in coastal areas. It belongs to the Roseobacter clade, a widespread group in pelagic marine ecosystems. Species of the Roseobacter clade are regularly used as models to understand the evolution and physiological adaptability of generalist bacteria. E. mobile BBCC367 comprises two chromosomes and two plasmids. We used gel-free shotgun proteomics to assess its protein expression under 16 different conditions, including stress factors such as elevated temperature, nutrient limitation, high metal concentration, and UVB exposure. Comparison of the different conditions allowed us not only to retrieve almost 70% of the predicted proteins, but also to define three main protein assemblages: 584 essential core proteins, 2,144 facultative accessory proteins and 355 specific unique proteins. While the core proteome mainly exhibited proteins involved in essential functions to sustain life such as DNA, amino acids, carbohydrates, cofactors, vitamins and lipids metabolisms, the accessory and unique proteomes revealed a more specific adaptation with the expression of stress-related proteins, such as DNA repair proteins (accessory proteome), transcription regulators and a significant predominance of transporters (unique proteome). Our study provides insights into how E. mobile BBCC367 adapts to environmental changes and copes with diverse stresses.en_UK
dc.language.isoenen_UK
dc.publisherFrontiers Media SAen_UK
dc.relationMatallana-Surget S, Werner J, Wattiez R, Lebaron K, Intertaglia L, Regan C, Morris J, Teeling H, Ferrer M, Golyshin PN, Gerogiorgis D, Reilly SI & Lebaron P (2018) Proteogenomic Analysis of Epibacterium Mobile BBCC367, a Relevant Marine Bacterium Isolated From the South Pacific Ocean. Frontiers in Microbiology, 9, Art. No.: 3125. https://doi.org/10.3389/fmicb.2018.03125.en_UK
dc.rights© 2018 Matallana-Surget, Werner, Wattiez, Lebaron, Intertaglia, Regan, Morris, Teeling, Ferrer, Golyshin, Gerogiorgis, Reilly and Lebaron. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.en_UK
dc.subjectEpibacterium mobileen_UK
dc.subjectproteogenomicen_UK
dc.subjectroseobacteren_UK
dc.subjectstress response and adaptationen_UK
dc.subjectquantitative proteomicsen_UK
dc.titleProteogenomic Analysis of Epibacterium Mobile BBCC367, a Relevant Marine Bacterium Isolated From the South Pacific Oceanen_UK
dc.typeJournal Articleen_UK
dc.identifier.doi10.3389/fmicb.2018.03125en_UK
dc.identifier.pmid30622520en_UK
dc.citation.jtitleFrontiers in Microbiologyen_UK
dc.citation.issn1664-302Xen_UK
dc.citation.volume9en_UK
dc.citation.publicationstatusPublisheden_UK
dc.citation.peerreviewedRefereeden_UK
dc.type.statusVoR - Version of Recorden_UK
dc.contributor.funderEuropean Commissionen_UK
dc.citation.date21/12/2018en_UK
dc.contributor.affiliationBiological and Environmental Sciencesen_UK
dc.contributor.affiliationLeibniz Institute of Baltic Sea Research, Warnemündeen_UK
dc.contributor.affiliationUniversity of Monsen_UK
dc.contributor.affiliationUniversity of Paris 6 (Pierre and Marie Curie University)en_UK
dc.contributor.affiliationMax Planck Institute for Marine Microbiologyen_UK
dc.contributor.affiliationSpanish National Research Council (CSIC)en_UK
dc.contributor.affiliationBangor Universityen_UK
dc.contributor.affiliationUniversity of Edinburghen_UK
dc.contributor.affiliationBangor Universityen_UK
dc.contributor.affiliationUniversity of Paris 6 (Pierre and Marie Curie University)en_UK
dc.identifier.isiWOS:000454068900001en_UK
dc.identifier.wtid1082873en_UK
dc.contributor.orcid0000-0002-6023-3215en_UK
dc.date.accepted2018-12-03en_UK
dc.date.firstcompliantdepositdate2019-01-11en_UK
dc.description.refREF Compliant by Deposit in Stirling's Repositoryen_UK
Appears in Collections:Biological and Environmental Sciences Journal Articles

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