1. STORRE
  2. Faculty of Natural Sciences
  3. Computing Science and Mathematics
  4. Computing Science and Mathematics Conference Papers and Proceedings
Please use this identifier to cite or link to this item: http://hdl.handle.net/1893/16641
Full metadata record
DC FieldValueLanguage
dc.contributor.authorScott, Erinen_UK
dc.contributor.authorHoyle, Andrewen_UK
dc.contributor.authorShankland, Carronen_UK
dc.contributor.editorBradley, Jen_UK
dc.contributor.editorHeljanko, Ken_UK
dc.contributor.editorKnottenbelt, Wen_UK
dc.contributor.editorThomas, Nen_UK
dc.date.accessioned2018-01-09T07:47:28Z-
dc.date.available2018-01-09T07:47:28Z-
dc.date.issued2013-08-16en_UK
dc.identifier.urihttp://hdl.handle.net/1893/16641-
dc.description.abstractWe present a Bio-PEPA (Biochemical-Performance Evaluation Process Algebra) computational model for the Pacific oyster, derived from a DEB (Dynamic Energy Budget) mathematical model. Experience with this specific model allows us to propose a generic scheme for translation between the widely-used DEB theory and Bio-PEPA. The benefits of translation are that a range of novel analysis tools become available, therefore improving the potential to understand complex biological phenomena at a systems level. This work also provides a link between biology, mathematics and computer science: such interlinking of disciplines is the core of the systems approach to biology.en_UK
dc.language.isoenen_UK
dc.publisherElsevieren_UK
dc.relationScott E, Hoyle A & Shankland C (2013) PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study. Bradley J (Editor), Heljanko K (Editor), Knottenbelt W (Editor) & Thomas N (Editor) PASM'12: Sixth International Workshop on Practical Applications of Stochastic Modelling, Imperial College London, UK, 17.09.2012-17.09.2012. Electronic Notes in Theoretical Computer Science, 296, pp. 211-228. https://doi.org/10.1016/j.entcs.2013.07.014en_UK
dc.relation.urihttp://homepages.cs.ncl.ac.uk/nigel.thomas/PASM12.htm#publicationen_UK
dc.rightsThis article is open-access. Open access publishing allows free access to and distribution of published articles where the author retains copyright of their work by employing a Creative Commons attribution licence. Proper attribution of authorship and correct citation details should be given.en_UK
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/en_UK
dc.subjectDynamic Energy Budget Modelen_UK
dc.subjectBio-PEPAen_UK
dc.subjectProcess Algebraen_UK
dc.subjectPacific oyster (Crassostrea gigas) case studyen_UK
dc.subjectPhysiological modelsen_UK
dc.subjectComputational toolsen_UK
dc.titlePEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case studyen_UK
dc.typeConference Paperen_UK
dc.identifier.doi10.1016/j.entcs.2013.07.014en_UK
dc.citation.jtitleElectronic Notes in Theoretical Computer Scienceen_UK
dc.citation.issn1571-0661en_UK
dc.citation.volume296en_UK
dc.citation.spage211en_UK
dc.citation.epage228en_UK
dc.citation.publicationstatusPublisheden_UK
dc.citation.peerreviewedRefereeden_UK
dc.type.statusVoR - Version of Recorden_UK
dc.author.emailc.e.shankland@stir.ac.uken_UK
dc.citation.conferencedates2012-09-17 - 2012-09-17en_UK
dc.citation.conferencelocationImperial College London, UKen_UK
dc.citation.conferencenamePASM'12: Sixth International Workshop on Practical Applications of Stochastic Modellingen_UK
dc.citation.date17/09/2012en_UK
dc.contributor.affiliationComputing Scienceen_UK
dc.contributor.affiliationComputing Scienceen_UK
dc.contributor.affiliationComputing Scienceen_UK
dc.identifier.isiWOS:000216919300014en_UK
dc.identifier.scopusid2-s2.0-84883387223en_UK
dc.identifier.wtid687726en_UK
dc.contributor.orcid0000-0001-7190-1728en_UK
dc.contributor.orcid0000-0002-9117-7041en_UK
dc.contributor.orcid0000-0001-7672-2884en_UK
dcterms.dateAccepted2012-09-17en_UK
dc.date.filedepositdate2013-09-12en_UK
rioxxterms.typeConference Paper/Proceeding/Abstracten_UK
rioxxterms.versionVoRen_UK
local.rioxx.authorScott, Erin|0000-0001-7190-1728en_UK
local.rioxx.authorHoyle, Andrew|0000-0002-9117-7041en_UK
local.rioxx.authorShankland, Carron|0000-0001-7672-2884en_UK
local.rioxx.projectInternal Project|University of Stirling|https://isni.org/isni/0000000122484331en_UK
local.rioxx.contributorBradley, J|en_UK
local.rioxx.contributorHeljanko, K|en_UK
local.rioxx.contributorKnottenbelt, W|en_UK
local.rioxx.contributorThomas, N|en_UK
local.rioxx.freetoreaddate2013-09-12en_UK
local.rioxx.licencehttp://creativecommons.org/licenses/by-nc-nd/4.0/|2013-09-12|en_UK
local.rioxx.filenamePEPA'd oysters.pdfen_UK
local.rioxx.filecount1en_UK
local.rioxx.source1571-0661en_UK
Appears in Collections:Computing Science and Mathematics Conference Papers and Proceedings

Files in This Item:
File Description SizeFormat 
PEPA'd oysters.pdfFulltext - Published Version1.06 MBAdobe PDFView/Open


This item is protected by original copyright

View License
Show simple item record


A file in this item is licensed under a Creative Commons License Creative Commons

Items in the Repository are protected by copyright, with all rights reserved, unless otherwise indicated.

The metadata of the records in the Repository are available under the CC0 public domain dedication: No Rights Reserved https://creativecommons.org/publicdomain/zero/1.0/

If you believe that any material held in STORRE infringes copyright, please contact library@stir.ac.uk providing details and we will remove the Work from public display in STORRE and investigate your claim.