Please use this identifier to cite or link to this item: http://hdl.handle.net/1893/25845
Full metadata record
DC FieldValueLanguage
dc.contributor.authorZarkasi, Kamarul Zaman-
dc.contributor.authorTaylor, Richard S-
dc.contributor.authorGlencross, Brett-
dc.contributor.authorAbell, Guy C J-
dc.contributor.authorTamplin, Mark L-
dc.contributor.authorBowman, John P-
dc.date.accessioned2017-11-14T00:03:05Z-
dc.date.issued2017-10-
dc.identifier.urihttp://hdl.handle.net/1893/25845-
dc.description.abstractIn this study, microbial community dynamics were assessed within a simple invitro model system in order to understand those changes influenced by diet. The abundance and diversity of bacteria were monitored within different treatment slurries inoculated with salmon faecal samples in order to mimic the effects of dietary variables. A total of five complete diets and two ingredients (plant meal) were tested. The total viable counts (TVCs) and sequencing data revealed that there was very clear separation between the complete diets and the plant meal treatments, suggesting a dynamic response by the allochthonous bacteria to the treatments. Automated ribosomal intergenic spacer analysis (ARISA) results showed that different diet formulations produced different patterns of fragments, with no separation between the complete diets. However, plant-based protein ingredients were clearly separated from the other treatments. 16S rRNA Illumina-based sequencing analysis showed that members of the genera Aliivibrio,Vibrio and Photobacterium became predominant for all complete diets treatments. The plant-based protein ingredient treatments only sustained weak growth of the genusSphingomonas. Invitro based testing of diets could be a useful strategy to determine the potential impact of either complete feeds or ingredients on major fish gastrointestinal tract microbiome members.en_UK
dc.language.isoen-
dc.publisherElsevier-
dc.relationZarkasi KZ, Taylor RS, Glencross B, Abell GCJ, Tamplin ML & Bowman JP (2017) In vitro characteristics of an Atlantic salmon (Salmo salar L.) hind gut microbial community in relation to different dietary treatments, Research in Microbiology, 168 (8), pp. 751-759.-
dc.rightsThis item has been embargoed for a period. During the embargo please use the Request a Copy feature at the foot of the Repository record to request a copy directly from the author. You can only request a copy if you wish to use this work for your own research or private study. Accepted refereed manuscript of: Zarkasi KZ, Taylor RS, Glencross B, Abell GCJ, Tamplin ML & Bowman JP (2017) In vitro characteristics of an Atlantic salmon (Salmo salar L.) hind gut microbial community in relation to different dietary treatments, Research in Microbiology, 168 (8), pp. 751-759. DOI: 10.1016/j.resmic.2017.07.003 © 2017, Elsevier. Licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International http://creativecommons.org/licenses/by-nc-nd/4.0/-
dc.subjectIntestinal bacteriaen_UK
dc.subjectIn vitro model systemen_UK
dc.subject16S rRNA geneen_UK
dc.subjectDietary treatmentsen_UK
dc.subjectAtlantic salmonen_UK
dc.titleIn vitro characteristics of an Atlantic salmon (Salmo salar L.) hind gut microbial community in relation to different dietary treatmentsen_UK
dc.typeJournal Articleen_UK
dc.rights.embargodate2018-07-17T00:00:00Z-
dc.rights.embargoreasonPublisher requires embargo of 12 months after formal publication.-
dc.identifier.doihttp://dx.doi.org/10.1016/j.resmic.2017.07.003-
dc.identifier.pmid28728852-
dc.citation.jtitleResearch in Microbiology-
dc.citation.issn0923-2508-
dc.citation.volume168-
dc.citation.issue8-
dc.citation.spage751-
dc.citation.epage759-
dc.citation.publicationstatusPublished-
dc.citation.peerreviewedRefereed-
dc.type.statusPost-print (author final draft post-refereeing)-
dc.author.emailb.d.glencross@stir.ac.uk-
dc.citation.date17/07/2017-
dc.contributor.affiliationUniversiti Sains Malaysia (University of Science Malaysia)-
dc.contributor.affiliationCommonwealth Scientific and Industrial Research Organisation (CSIRO)-
dc.contributor.affiliationAquaculture-
dc.contributor.affiliationCommonwealth Scientific and Industrial Research Organisation (CSIRO)-
dc.contributor.affiliationUniversity of Tasmania-
dc.contributor.affiliationUniversity of Tasmania-
dc.rights.embargoterms2018-07-18-
dc.rights.embargoliftdate2018-07-18-
dc.identifier.isi000413662700007-
Appears in Collections:Aquaculture Journal Articles

Files in This Item:
File Description SizeFormat 
Zarkasi_et_a_2017-GOA_version.pdf418.03 kBAdobe PDFUnder Embargo until 18/7/2018     Request a copy

Note: If any of the files in this item are currently embargoed, you can request a copy directly from the author by clicking the padlock icon above. However, this facility is dependent on the depositor still being contactable at their original email address.

This item is protected by original copyright



Items in the Repository are protected by copyright, with all rights reserved, unless otherwise indicated.

If you believe that any material held in STORRE infringes copyright, please contact library@stir.ac.uk providing details and we will remove the Work from public display in STORRE and investigate your claim.