Please use this identifier to cite or link to this item:
http://hdl.handle.net/1893/23348
Full metadata record
DC Field | Value | Language |
---|---|---|
dc.contributor.author | Manousaki, Tereza | en_UK |
dc.contributor.author | Tsakogiannis, Alexandros | en_UK |
dc.contributor.author | Taggart, John | en_UK |
dc.contributor.author | Palaiokostas, Christos | en_UK |
dc.contributor.author | Tsaparis, Dimitris | en_UK |
dc.contributor.author | Lagnel, Jacques | en_UK |
dc.contributor.author | Chatziplis, Dimitris | en_UK |
dc.contributor.author | Magoulas, Antonios | en_UK |
dc.contributor.author | Papandroulakis, Nikos | en_UK |
dc.contributor.author | Mylonas, Constantinos C | en_UK |
dc.contributor.author | Tsigenopoulos, Costas S | en_UK |
dc.date.accessioned | 2016-07-13T00:04:16Z | - |
dc.date.available | 2016-07-13T00:04:16Z | - |
dc.date.issued | 2016-03-01 | en_UK |
dc.identifier.uri | http://hdl.handle.net/1893/23348 | - |
dc.description.abstract | Common pandora (Pagellus erythrinus) is a benthopelagic marine fish belonging to the teleost family Sparidae, and a newly recruited species in Mediterranean aquaculture. The paucity of genetic information relating to sparids, despite their growing economic value for aquaculture, provides the impetus for exploring the genomics of this fish group. Genomic tool development, such as genetic linkage maps provision, lays the groundwork for linking genotype to phenotype, allowing fine-mapping of loci responsible for beneficial traits. In this study, we applied ddRAD methodology to identify polymorphic markers in a full-sib family of common pandora. Employing the Illumina MiSeq platform, we sampled and sequenced a size-selected genomic fraction of 99 individuals, which led to the identification of 920 polymorphic loci. Downstream mapping analysis resulted in the construction of 24 robust linkage groups, corresponding to the karyotype of the species. The common pandora linkage map showed varying degrees of conserved synteny with four other teleost genomes, namely the European seabass (Dicentrarchus labrax), Nile tilapia (Oreochromis niloticus), stickleback (Gasterosteus aculeatus), and medaka (Oryzias latipes), suggesting a conserved genomic evolution in Sparidae. Our work exploits the possibilities of genotyping by sequencing to gain novel insights into genome structure and evolution. Such information will boost the study of cultured species and will set the foundation for a deeper understanding of the complex evolutionary history of teleosts. | en_UK |
dc.language.iso | en | en_UK |
dc.publisher | Genetics Society of America | en_UK |
dc.relation | Manousaki T, Tsakogiannis A, Taggart J, Palaiokostas C, Tsaparis D, Lagnel J, Chatziplis D, Magoulas A, Papandroulakis N, Mylonas CC & Tsigenopoulos CS (2016) Exploring a nonmodel teleost genome through RAD sequencing - Linkage mapping in Common Pandora, Pagellus erythrinus and comparative genomic analysis. G3: Genes Genomes Genetics, 6 (3), pp. 509-519. https://doi.org/10.1534/g3.115.023432 | en_UK |
dc.rights | Copyright © 2016 Manousaki et al. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. | en_UK |
dc.rights.uri | http://creativecommons.org/licenses/by/4.0/ | en_UK |
dc.title | Exploring a nonmodel teleost genome through RAD sequencing - Linkage mapping in Common Pandora, Pagellus erythrinus and comparative genomic analysis | en_UK |
dc.type | Journal Article | en_UK |
dc.identifier.doi | 10.1534/g3.115.023432 | en_UK |
dc.identifier.pmid | 26715088 | en_UK |
dc.citation.jtitle | G3: Genes Genomes Genetics | en_UK |
dc.citation.issn | 2160-1836 | en_UK |
dc.citation.volume | 6 | en_UK |
dc.citation.issue | 3 | en_UK |
dc.citation.spage | 509 | en_UK |
dc.citation.epage | 519 | en_UK |
dc.citation.publicationstatus | Published | en_UK |
dc.citation.peerreviewed | Refereed | en_UK |
dc.type.status | VoR - Version of Record | en_UK |
dc.author.email | j.b.taggart@stir.ac.uk | en_UK |
dc.citation.date | 29/12/2015 | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Institute of Aquaculture | en_UK |
dc.contributor.affiliation | Institute of Aquaculture | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Aristotle University of Thessaloniki | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.contributor.affiliation | Hellenic Centre for Marine Research | en_UK |
dc.identifier.isi | WOS:000371831000002 | en_UK |
dc.identifier.scopusid | 2-s2.0-85017076696 | en_UK |
dc.identifier.wtid | 565336 | en_UK |
dc.contributor.orcid | 0000-0002-3843-9663 | en_UK |
dc.date.accepted | 2015-12-16 | en_UK |
dcterms.dateAccepted | 2015-12-16 | en_UK |
dc.date.filedepositdate | 2016-06-21 | en_UK |
rioxxterms.apc | not required | en_UK |
rioxxterms.type | Journal Article/Review | en_UK |
rioxxterms.version | VoR | en_UK |
local.rioxx.author | Manousaki, Tereza| | en_UK |
local.rioxx.author | Tsakogiannis, Alexandros| | en_UK |
local.rioxx.author | Taggart, John|0000-0002-3843-9663 | en_UK |
local.rioxx.author | Palaiokostas, Christos| | en_UK |
local.rioxx.author | Tsaparis, Dimitris| | en_UK |
local.rioxx.author | Lagnel, Jacques| | en_UK |
local.rioxx.author | Chatziplis, Dimitris| | en_UK |
local.rioxx.author | Magoulas, Antonios| | en_UK |
local.rioxx.author | Papandroulakis, Nikos| | en_UK |
local.rioxx.author | Mylonas, Constantinos C| | en_UK |
local.rioxx.author | Tsigenopoulos, Costas S| | en_UK |
local.rioxx.project | Internal Project|University of Stirling|https://isni.org/isni/0000000122484331 | en_UK |
local.rioxx.freetoreaddate | 2016-06-21 | en_UK |
local.rioxx.licence | http://creativecommons.org/licenses/by/4.0/|2016-06-21| | en_UK |
local.rioxx.filename | Manousaki et al. 2016 G3 - Linkage Mapping in Common Pandora Pagellus erythrinus and Comparative Genomic Analysis.pdf | en_UK |
local.rioxx.filecount | 1 | en_UK |
local.rioxx.source | 2160-1836 | en_UK |
Appears in Collections: | Aquaculture Journal Articles |
Files in This Item:
File | Description | Size | Format | |
---|---|---|---|---|
Manousaki et al. 2016 G3 - Linkage Mapping in Common Pandora Pagellus erythrinus and Comparative Genomic Analysis.pdf | Fulltext - Published Version | 2.48 MB | Adobe PDF | View/Open |
This item is protected by original copyright |
A file in this item is licensed under a Creative Commons License
Items in the Repository are protected by copyright, with all rights reserved, unless otherwise indicated.
The metadata of the records in the Repository are available under the CC0 public domain dedication: No Rights Reserved https://creativecommons.org/publicdomain/zero/1.0/
If you believe that any material held in STORRE infringes copyright, please contact library@stir.ac.uk providing details and we will remove the Work from public display in STORRE and investigate your claim.