Please use this identifier to cite or link to this item: http://hdl.handle.net/1893/22286
Appears in Collections:Aquaculture Journal Articles
Peer Review Status: Refereed
Title: A comparative analysis of the response of the hepatic transcriptome to dietary docosahexaenoic acid in Atlantic salmon (Salmo salar) post-smolts
Authors: Glencross, Brett
De, Santis Christian
Bicskei, Beatrix
Taggart, John
Bron, James
Betancor, Monica
Tocher, Douglas R
Contact Email: drt1@stir.ac.uk
Keywords: Essential fatty acid
DHA
Gene expression
Transcriptome
Atlantic salmon
Microarray
Issue Date: 7-Sep-2015
Publisher: BioMed Central
Citation: Glencross B, De Santis C, Bicskei B, Taggart J, Bron J, Betancor M & Tocher DR (2015) A comparative analysis of the response of the hepatic transcriptome to dietary docosahexaenoic acid in Atlantic salmon (Salmo salar) post-smolts, BMC Genomics, 16 (1), Art. No.: 684.
Abstract: Background: The present study aimed to explore the impact of dietary docosahexaenoic acid (DHA) on aspects of the metabolism of Atlantic salmon (Salmo salar). The effects of diets containing increasing levels of DHA (1 g kg−1, 3 g kg−1, 6 g kg−1, 10 g kg−1and 13 g kg−1) on the liver transcriptome of post-smolt salmon was examined to elucidate patterns of gene expression and responses of specific metabolic pathways. Total RNA was isolated from the liver of individual fish and analyzed using a custom gene expression 44K feature Atlantic salmon oligo-microarray.  Results: The expression of up to 911 unique annotated genes was significantly affected by dietary DHA inclusion relative to a low DHA reference diet. Analysis of a total of 797 unique genes were found with a significant linear correlation between expression level and dietary DHA. Gene-Set Enrichment Analysis (GSEA) identified a range of pathways that were significantly affected by dietary DHA content.  Conclusions: Pathways that showed a significant response to dietary DHA level included those for long-chain polyunsaturated fatty acid biosynthesis, fatty acid elongation, steroid biosynthesis, glycan biosynthesis, protein export and protein processing in the endoplasmic reticulum. These findings suggest that in addition to clear roles in influencing lipid metabolic pathways, DHA might also have key functional roles in other pathways distinct from lipid metabolism.
Type: Journal Article
URI: http://hdl.handle.net/1893/22286
DOI Link: http://dx.doi.org/10.1186/s12864-015-1810-z
Rights: © 2015 Glencross et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
Affiliation: Aquaculture
Aquaculture
University of Stirling
Aquaculture
Aquaculture
Aquaculture
Aquaculture

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