|Appears in Collections:||Computing Science and Mathematics Conference Papers and Proceedings|
|Peer Review Status:||Refereed|
|Title:||PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study|
|Citation:||Scott E, Hoyle A & Shankland C (2013) PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study In: Bradley J, Heljanko K, Knottenbelt W, Thomas N (ed.), Elsevier. PASM'12: Sixth International Workshop on Practical Applications of Stochastic Modelling, 17.9.2012 - 17.9.2012, Imperial College London, UK, Electronic Notes in Theoretical Computer Science, 296, pp. 211-228.|
|Conference Name:||PASM'12: Sixth International Workshop on Practical Applications of Stochastic Modelling|
|Conference Location:||Imperial College London, UK|
|Abstract:||We present a Bio-PEPA (Biochemical-Performance Evaluation Process Algebra) computational model for the Pacific oyster, derived from a DEB (Dynamic Energy Budget) mathematical model. Experience with this specific model allows us to propose a generic scheme for translation between the widely-used DEB theory and Bio-PEPA. The benefits of translation are that a range of novel analysis tools become available, therefore improving the potential to understand complex biological phenomena at a systems level. This work also provides a link between biology, mathematics and computer science: such interlinking of disciplines is the core of the systems approach to biology.|
|Status:||Publisher version (final published refereed version)|
|Rights:||This article is open-access. Open access publishing allows free access to and distribution of published articles where the author retains copyright of their work by employing a Creative Commons attribution licence. Proper attribution of authorship and correct citation details should be given.|
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