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http://hdl.handle.net/1893/16641| Appears in Collections: | Computing Science and Mathematics Conference Papers and Proceedings |
| Peer Review Status: | Refereed |
| Author(s): | Scott, Erin Hoyle, Andrew Shankland, Carron |
| Contact Email: | c.e.shankland@stir.ac.uk |
| Title: | PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study |
| Editor(s): | Bradley, J Heljanko, K Knottenbelt, W Thomas, N |
| Citation: | Scott E, Hoyle A & Shankland C (2013) PEPA'd Oysters: Converting Dynamic Energy Budget Models to Bio-PEPA, illustrated by a Pacific oyster case study. Bradley J (Editor), Heljanko K (Editor), Knottenbelt W (Editor) & Thomas N (Editor) PASM'12: Sixth International Workshop on Practical Applications of Stochastic Modelling, Imperial College London, UK, 17.09.2012-17.09.2012. Electronic Notes in Theoretical Computer Science, 296, pp. 211-228. https://doi.org/10.1016/j.entcs.2013.07.014 |
| Issue Date: | 16-Aug-2013 |
| Date Deposited: | 12-Sep-2013 |
| Conference Name: | PASM'12: Sixth International Workshop on Practical Applications of Stochastic Modelling |
| Conference Dates: | 2012-09-17 - 2012-09-17 |
| Conference Location: | Imperial College London, UK |
| Abstract: | We present a Bio-PEPA (Biochemical-Performance Evaluation Process Algebra) computational model for the Pacific oyster, derived from a DEB (Dynamic Energy Budget) mathematical model. Experience with this specific model allows us to propose a generic scheme for translation between the widely-used DEB theory and Bio-PEPA. The benefits of translation are that a range of novel analysis tools become available, therefore improving the potential to understand complex biological phenomena at a systems level. This work also provides a link between biology, mathematics and computer science: such interlinking of disciplines is the core of the systems approach to biology. |
| Status: | VoR - Version of Record |
| Rights: | This article is open-access. Open access publishing allows free access to and distribution of published articles where the author retains copyright of their work by employing a Creative Commons attribution licence. Proper attribution of authorship and correct citation details should be given. |
| Licence URL(s): | http://creativecommons.org/licenses/by-nc-nd/4.0/ |
Files in This Item:
| File | Description | Size | Format | |
|---|---|---|---|---|
| PEPA'd oysters.pdf | Fulltext - Published Version | 1.06 MB | Adobe PDF | View/Open |
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